If theme set to dark, the dark background will be produced instead of white
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If you provide custom label names keep the same order of label names as default ]Ĭhange background theme. For more options see bbox_to_anchor parameter at Position of the legend outside of the plot. If you provide this option, default label will be replaced
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Supported format are eps, pdf, pgf, png, ps, raw, rgba, svg, svgz įont size for axis ticks įont name for axis ticks įont size for axis labels įont name for axis labels Show the figure on console instead of saving in current folder įormat of figure to save. Show grid lines on plot with defined log fold change ( lfc_thr) and P-value ( pv_thr) threshold value gfont not compatible with gstyle=2.įigure size įigure resolution in dpi. If this option set to "deg" it will label all genes defined by lfc_thr and pv_thr įont size for genenames. The gene Ids must be present in the geneid column. This is necessary for plotting gene label on the points P value or adjusted p value cutoff for up and downregulated genes Log fold change cutoff for up and downregulated genes Name of a column having P-values or adjusted P-values Name of a column having log or absolute fold change values
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Pandas dataframe table having atleast gene IDs, log fold change, P-values or adjusted P-values columns _version_ '0.4' Gene expression analysis Volcano plotī(df, lfc, pv, lfc_thr, pv_thr, color, valpha, geneid, genenames, gfont, dim, r, ar, dotsize, markerdot, sign_line, gstyle, show, figtype, axtickfontsize, axtickfontname, axlabelfontsize, axlabelfontname, axxlabel, axylabel, xlm, ylm, plotlegend, legendpos, figname, legendanchor, legendlabels, theme) Parameters